Docs
Choose how to connect
Use account sign-in for the CLI, Python and interactive agents. Use an organization API key for REST, automation or a machine without a browser.
Quickstarts
For agents
Request any docs URL with Accept: text/markdown, or use its matching path under /docs/md. Start with /llms.txt. The skills index lists the available skills, and the install command adds them to Claude Code, Cursor and Codex.
curl -sL https://phi.dynotx.com/llms.txt
curl -sL https://phi.dynotx.com/skills.json
npx skills add dynotx/phi-skillsModels
All modelsStructure prediction12 modelsAlphaFold 2 · Boltz-1 · Boltz-2 · Chai-1 · ESMFold · ESMFold 2 · Mol-1 · OpenDDE · OpenFold 3 · ProtenixBinder design16 modelsBindCraft · BoltzGen · Dyno Psi · ESMFold2-Design · Genie3 · Germinal · Proteina-Complexa · PXDesign · RFantibody · RFD4-Proteina · RFdiffusion · RFdiffusion 3Sequence design5 modelsESM-IF1 · Evo 2 · PottsMPNN · ProteinMPNN · Proton-PottsMPNNAnalysis7 modelsDockQ · Fold and score novelty · MaSIF-site · MSA Pairformer · Phi Score · Seq2Symm · Structural noveltyPocket discovery1 modelLacunaEmbeddings2 modelsESM C · Evo 2
Guides
API keysUse an organization key for REST, automation, or a machine without a browser.Hotspots and numberingUse author residue numbers when defining hotspots for each model.How to pilotCompare generators and hotspot sets on a small run, then send the best combination to the batch.Metrics and FiltersChoose filter thresholds and interpret the metrics and sequence scores Phi reports.